Match details
Record ID: |
AF430734.1 |
Database: |
nt |
Go to original record |
Description: |
Caesalpinia pumilio chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Hoffmannseggia pumilio |
Original size: |
1050 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
592 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggaaagg gagaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatacgtact
301 gaaatactat ttcaattgat tagaccagac agaccccaaa tccctatttt
351 ttaatattta tatgacaaat gaaagatgtg aatagattcc aagttgaaga
401 aagaatcaaa tatttattga tcaaatcatt cactccatca tagtctgata
451 gatcttttga agaactgatt aatcggacga gaataaagat agagttccat
501 tctacatgtc aataccgaca acaatgaaat ttatagtaag aggaaaatcc
551 gtcgacttta gaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.