Match details
| Record ID: |
AF430740.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia trichocarpa chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Arquita trichocarpa |
| Original size: |
1081 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
580 |
+ |
580 bp |
|
1 cgaaatcggt agacgctacg gacttamttg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagtttata
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactct agaaaagaaa ggatcaagga tgaacatata tatacgtata
301 cgtactgaaa tactatttca attgattaga ccagacagac cccaaatctc
351 tatttttgaa tatttatatg acaaatgaaa gttgaagaaa gaatcgaata
401 tttattgacc aaatcattca ttccatgata gtctgataga tcttttgaac
451 aactgattaa tcggacgaga ataaagatag agtcccattc tacatgtcaa
501 taccgacaac aatgaaattt atagtaagag gaaaatccgt cgactttaga
551 aatcgtgagg gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
580 |
561 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
