Match details
Record ID: |
AF430728.1 |
Database: |
nt |
Go to original record |
Description: |
Caesalpinia nelsonii chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Erythrostemon nelsonii |
Original size: |
1079 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
600 |
+ |
600 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatatgtata
301 ctgaaatatt atttcaattg attagaccag acagacccca aatccctatt
351 tgttaatatt tatataacaa atgaaagatg tgaatagatt ccaagttgaa
401 gaaagaatcg aatatttatt gatcaaacca ttcattccat gataatgata
451 gtctgataaa tcttttgaag aactgattaa tcggacgaga ataaagatag
501 agtcccattc tacatgtcaa taccgacaac aattaaattt atagtaagag
551 gaaaatccgt cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
600 |
581 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.