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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU817469.1 nt Ixora littoralis trnT-trnL intergen... 1662 bp Ixora littoralis QL-PLN-00-007 565 bp View
EU817470.1 nt Ixora brunonis trnT-trnL intergenic... 1617 bp Ixora brunonis QL-PLN-00-007 565 bp View
EU817471.1 nt Ixora tanzaniensis trnT-trnL interg... 1672 bp Ixora tanzaniensis QL-PLN-00-007 566 bp View
EU817473.1 nt Myonima violacea trnT-trnL intergen... 1646 bp Ixora parviflora QL-PLN-00-007 565 bp View
EU817474.1 nt Alberta sambiranensis trnT-trnL int... 1671 bp Razafimandimbisonia sambiranensis QL-PLN-00-007 559 bp View
EU817476.1 nt Versteegia cauliflora trnT-trnL int... 1691 bp Ixora novoguineensis QL-PLN-00-007 565 bp View
EU828128.2 nt Agalinis acuta isolate 125CT tRNA-T... 1420 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828129.1 nt Agalinis acuta isolate 139RI tRNA-T... 1647 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828130.1 nt Agalinis acuta isolate 13PCMA tRNA-... 1672 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828131.1 nt Agalinis acuta isolate 1BVMA tRNA-T... 1672 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828132.1 nt Agalinis acuta isolate 211HPNY tRNA... 1637 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828133.1 nt Agalinis acuta isolate 229MDNY tRNA... 1634 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828134.1 nt Agalinis acuta isolate 265SMNY tRNA... 1651 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828135.1 nt Agalinis acuta isolate 33SNMA tRNA-... 1691 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828136.1 nt Agalinis acuta isolate 51MD tRNA-Th... 1634 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828137.1 nt Agalinis aphylla isolate 3FL tRNA-T... 1646 bp Agalinis aphylla QL-PLN-00-007 553 bp View
EU828138.1 nt Agalinis aphylla isolate 4AL tRNA-T... 1628 bp Agalinis aphylla QL-PLN-00-007 553 bp View
EU828139.1 nt Agalinis aphylla isolate 1IA tRNA-T... 1638 bp Agalinis aphylla QL-PLN-00-007 555 bp View
EU828140.1 nt Agalinis auriculata isolate 7IL tRN... 1621 bp Agalinis auriculata QL-PLN-00-007 555 bp View
EU828141.1 nt Agalinis auriculata isolate 1 tRNA-... 1607 bp Agalinis auriculata QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.