Match details
| Record ID: |
EU828130.1 |
| Database: |
nt |
Go to original record |
| Description: |
Agalinis acuta isolate 13PCMA tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
| Taxon: |
Agalinis acuta |
| Original size: |
1672 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
732 |
1283 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt cttaaaccaa aagttcagaa
151 aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttgatt gcgctgatag aggaatgaaa cttcagaaag gatgaaggat
251 aaacgtatct attgaatact atatcaaaat caaatgattg attaatgatg
301 gcccaaatct ctatctgtat ttttgaatac gaaaagtgga agaattggtg
351 tgaatttctt ccataacgaa tattcattca tcaaatcatt cactccatcg
401 tccgatagat cttttttaaa agatctgatt aatcggacga gaataaagat
451 agagtcccat tctacatgtc aataccggca acaatgaaat ttatagtaaa
501 aggaaaatcc gtcgactttt aaaatcgtga gggttcaagt ccctctatcc
551 cc
View other 21 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
