European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 552 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaagggcaat cctgagccaa atcctgtttt cttaaaccaa aagttcagaa
151   aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttgatt gcgctgatag aggaatgaaa cttcagaaag gatgaaggat
251   aaacgtatct attgaatact atatcaaaat caaatgattg attaatgatg
301   gcccaaatct ctatctgtat ttttgaatac gaaaagtgga agaattggtg
351   tgaatttctt ccataacgaa tattcattca tcaaatcatt cactccatcg
401   tccgatagat cttttttaaa agatctgatt aatcggacga gaataaagat
451   agagtcccat tctacatgtc aataccggca acaatgaaat ttatagtaaa
501   aggaaaatcc gtcgactttt aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828130.1 nt Agalinis acuta isolate 13PCMA tRNA-... 1672 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828131.1 nt Agalinis acuta isolate 1BVMA tRNA-T... 1672 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828133.1 nt Agalinis acuta isolate 229MDNY tRNA... 1634 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828134.1 nt Agalinis acuta isolate 265SMNY tRNA... 1651 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828135.1 nt Agalinis acuta isolate 33SNMA tRNA-... 1691 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828136.1 nt Agalinis acuta isolate 51MD tRNA-Th... 1634 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828146.1 nt Agalinis decemloba isolate 9NC tRNA... 1583 bp Agalinis decemloba QL-PLN-00-007 552 bp View
EU828173.1 nt Agalinis tenella isolate 1FL tRNA-T... 1672 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828198.1 nt Agalinis tenella isolate 13GA tRNA-... 1651 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828199.1 nt Agalinis tenella isolate 3SC tRNA-T... 1650 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828200.1 nt Agalinis tenella isolate 4GA tRNA-T... 1645 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828201.1 nt Agalinis tenella isolate 9GA tRNA-T... 1664 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828145.2 nt Agalinis decemloba isolate 6VA tRNA... 1195 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943558.1 nt Agalinis decemloba isolate 1ADEL3VA... 1065 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943560.1 nt Agalinis decemloba isolate 45ADEL1V... 1213 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943561.1 nt Agalinis decemloba isolate 19ADEWCN... 1150 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943569.1 nt Agalinis tenella isolate 79ATEBCGA ... 1141 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828129.1 nt Agalinis acuta isolate 139RI tRNA-T... 1647 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828132.1 nt Agalinis acuta isolate 211HPNY tRNA... 1637 bp Agalinis acuta QL-PLN-00-007 552 bp View
EU828197.1 nt Agalinis tenella isolate 11GA tRNA-... 1647 bp Agalinis tenella QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.