Match details
Record ID: |
EU828139.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis aphylla isolate 1IA tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis aphylla |
Original size: |
1638 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
701 |
1255 |
+ |
555 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttccgaaa ggatgaagga
251 taaacgtatc tattgaatac tatatcaaaa tcaaatgatt gattaatgat
301 ggcccaaatc tctatctgta tttttgaata cgaaaagtgg aagaattggt
351 gtgaatttct tccatcaaag aatattcatt catcaaatca ttcactccat
401 agtccgatag atcttttttt aaaagatctg attaatcgga cgagaataaa
451 gatagagtcc cattctacat gtcaataccg gcaacaatga aatttatagt
501 aaaaggaaaa tccgtcgact tttaaaatcg tgagggttca agtccctcta
551 tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
555 |
536 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.