Match details
Record ID: |
EU828137.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis aphylla isolate 3FL tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis aphylla |
Original size: |
1646 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
732 |
1284 |
+ |
553 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttccgaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggatgaagga
251 taaacgtatc tattgaatac tatatcaaaa tcaaatgatt gattaatgat
301 gggcccaatc tcgatctcta tttttgaata cgaaaagtgg aagaattggt
351 gtgcatttct tccataaaga atattcattc atcaaatcat tcactccata
401 gtccgatcga tcttttttaa aagatctgat taatcggacg agaataaaga
451 tagagtccca ttctacatgt caataccggc aacaatgaaa tttctagtaa
501 aaggaaaatc cgtcgacttt ttaaatcgtg agggttcaag tccctctatc
551 ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
553 |
534 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.