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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
PP153940.1 nt Periploca calophylla chloroplast, c... 153717 bp Periploca calophylla QL-PLN-00-007 566 bp View
PP153941.1 nt Periploca floribunda chloroplast, c... 153779 bp Periploca floribunda QL-PLN-00-007 566 bp View
PP153942.1 nt Periploca chrysantha chloroplast, c... 153535 bp Periploca chrysantha QL-PLN-00-007 559 bp View
PP159189.1 nt Cenchrus longissimus chloroplast, c... 138134 bp Cenchrus longissimus QL-PLN-00-007 614 bp View
PP159190.1 nt Cenchrus purpureus chloroplast, com... 138173 bp Cenchrus purpureus QL-PLN-00-007 613 bp View
PP159191.1 nt Cenchrus massaicus chloroplast, com... 137929 bp Cenchrus massaicus QL-PLN-00-007 612 bp View
PP159192.1 nt Cenchrus clandestinus chloroplast, ... 138001 bp Cenchrus clandestinus QL-PLN-00-007 617 bp View
PP159193.1 nt Eragrostis nutans chloroplast, comp... 134829 bp Eragrostis nutans QL-PLN-00-007 616 bp View
PP159194.1 nt Cenchrus longisetus chloroplast, co... 138554 bp Cenchrus longisetus QL-PLN-00-007 609 bp View
PP159195.1 nt Cenchrus setaceus chloroplast, comp... 138037 bp Cenchrus setaceus QL-PLN-00-007 617 bp View
PP159196.1 nt Cenchrus orientalis chloroplast, co... 138406 bp Cenchrus orientalis QL-PLN-00-007 612 bp View
PP159197.1 nt Cenchrus polystachios chloroplast, ... 138171 bp Cenchrus polystachios QL-PLN-00-007 613 bp View
PP159198.1 nt Cenchrus clandestinus chloroplast, ... 138001 bp Cenchrus clandestinus QL-PLN-00-007 617 bp View
V00178.1 nt Maize gene for tRNA-Leu(UAA) (conta... 640 bp Zea mays QL-PLN-00-007 532 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.