Match details
Record ID: |
PP159195.1 |
Database: |
nt |
Go to original record |
Description: |
Cenchrus setaceus chloroplast, complete genome. |
Taxon: |
Cenchrus setaceus |
Original size: |
138037 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47854 |
48470 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctaaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg taggggaagg aactccctcg
251 aaatactaga aagaagggct ttatacattt aatacacacg tatagatact
301 gacatagcaa acgattaatc acagaacccc tatcataata taggttcttt
351 attttatatt tttttctaga atgaaattag gaatgattat gaaatagaaa
401 attctgaatt tttttagaat tattgtgaat ccattccaat cgaatattga
451 gtaatcaaat ccttcaattc attgttttga gatcaaaagt ggattaatcg
501 aacgaggata aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.