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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 554 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282508.1 nt Ajuga chamaepitys genome assembly, ... 51913999 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282510.1 nt Ajuga chamaepitys genome assembly, ... 150704 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282639.1 nt Phragmites australis genome assembl... 137672 bp Phragmites australis QL-PLN-00-007 617 bp View
OY292386.1 nt Verbena officinalis genome assembly... 46094953 bp Verbena officinalis QL-PLN-00-007 553 bp View
OY292393.1 nt Verbena officinalis genome assembly... 153455 bp Verbena officinalis QL-PLN-00-007 553 bp View
OY730200.1 nt Pseudognaphalium luteoalbum genome ... 153410 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
OY737857.1 nt Triticum monococcum genome assembly... 57931760 bp Triticum monococcum QL-PLN-00-007 570 bp View
OY737865.1 nt Triticum monococcum genome assembly... 48899630 bp Triticum monococcum QL-PLN-00-007 570 bp View
OY770124.1 nt Verbascum thapsus genome assembly, ... 153343 bp Verbascum thapsus QL-PLN-00-007 567 bp View
OY776131.1 nt Galeopsis tetrahit genome assembly,... 75357568 bp Galeopsis tetrahit QL-PLN-00-007 568 bp View
OY776145.1 nt Galeopsis tetrahit genome assembly,... 151838 bp Galeopsis tetrahit QL-PLN-00-007 568 bp View
OY787633.1 nt Cruciata laevipes genome assembly, ... 31028921 bp Cruciata laevipes QL-PLN-00-007 620 bp View
OY787645.1 nt Cruciata laevipes genome assembly, ... 153225 bp Cruciata laevipes QL-PLN-00-007 620 bp View
OY992779.1 nt Logfia minima genome assembly, orga... 151262 bp Logfia minima QL-PLN-00-007 526 bp View
PP054832.1 nt Oreocharis burtii chloroplast, comp... 153584 bp Oreocharis burtii QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.