Match details
Record ID: |
OY282510.1 |
Database: |
nt |
Go to original record |
Description: |
Ajuga chamaepitys genome assembly, organelle: plastid:chloroplast |
Taxon: |
Ajuga chamaepitys |
Original size: |
150704 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47010 |
47564 |
+ |
555 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctgctaag tgataacttt caaattcaga gaaacccagg aactaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa gggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttcac tgcgctggta gaggaatctt ttcatagaaa cttcagaaag
251 gatgaaggat aaatggatct attgaatact atatcgaatg attcacgatg
301 gcccgaatct gtatttttta atatgaaaaa tggaagaatt ggtgtgaatt
351 gattccacat tgaagaaaaa atcgaatatt cattcatcaa atcattcact
401 ccatagtccg atagttcttt tcaagaactg attaatcgga cgagaataaa
451 gatagagtcc cgttctacat gtcaataccg gcaacaatga aatttatagt
501 aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551 tcccc
View other 10 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
555 |
536 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.