Match details
Record ID: |
OY787645.1 |
Database: |
nt |
Go to original record |
Description: |
Cruciata laevipes genome assembly, organelle: plastid:chloroplast |
Taxon: |
Cruciata laevipes |
Original size: |
153225 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48223 |
48842 |
+ |
620 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acctgctgag tgagagcttt caaattcaga gaaaccctgg aattaataaa
101 aaggggtaat cctgagccaa atcctatttt tcgaaaacaa aggtttagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttcgct gtgttagtcg ataattcttt ccatcaaaaa ctcagaaaat
251 acaactacta agtattaagt gaaggataaa cgtatatact atccatacgt
301 agtgagtagt atattttata ttaaattttt aaaattatta aatgagtaat
351 gacagcccca atgaatctat actttttcat agaaaaaatt atagaattgt
401 aattgttgtt aaaatattcc acgtttaaga aagaatctaa tattcattta
451 tcaaatgatt cactccacag tccgatagat ctttttacga acttattaat
501 cggacgagaa taaagataga gtcccgttct acatgtcaat gccggcaaca
551 atgaaattta tagttaagag gaaaatccgt cgacttttaa aatcgtgagg
601 gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
620 |
601 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.