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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ208875.1 nt Caesalpinia oyamae isolate TEH9 tRN... 1077 bp Erythrostemon oyamae QL-PLN-00-007 596 bp View
DQ208879.1 nt Caesalpinia oyamae isolate HUAJ2 tR... 1059 bp Erythrostemon oyamae QL-PLN-00-007 592 bp View
DQ208887.1 nt Caesalpinia hintonii isolate Inf10 ... 937 bp Erythrostemon hintonii QL-PLN-00-007 590 bp View
DQ208888.1 nt Caesalpinia hintonii isolate PLA1 t... 1022 bp Erythrostemon hintonii QL-PLN-00-007 590 bp View
DQ208889.1 nt Caesalpinia hintonii isolate PLA2 t... 995 bp Erythrostemon hintonii QL-PLN-00-007 590 bp View
DQ208892.1 nt Caesalpinia hintonii isolate Zic7 t... 998 bp Erythrostemon hintonii QL-PLN-00-007 592 bp View
DQ208893.1 nt Caesalpinia hintonii isolate Zic8 t... 992 bp Erythrostemon hintonii QL-PLN-00-007 592 bp View
DQ208900.1 nt Caesalpinia epifanioi isolate Cepi4... 1053 bp Erythrostemon epifanioi QL-PLN-00-007 594 bp View
DQ208901.1 nt Caesalpinia epifanioi isolate Cepi6... 1053 bp Erythrostemon epifanioi QL-PLN-00-007 594 bp View
DQ208904.1 nt Caesalpinia melanadenia isolate MEL... 1073 bp Erythrostemon melanadenius QL-PLN-00-007 590 bp View
DQ208920.1 nt Caesalpinia pannosa isolate PANNGPL... 1065 bp Erythrostemon pannosus QL-PLN-00-007 587 bp View
DQ208929.1 nt Caesalpinia pannosa isolate PANNCar... 1069 bp Erythrostemon pannosus QL-PLN-00-007 594 bp View
DQ353953.1 nt Anthoxanthum monticola subsp. alpin... 1841 bp Anthoxanthum monticola subsp. alpinum QL-PLN-00-007 611 bp View
DQ353957.1 nt Sesleria insularis voucher Soreng 3... 1969 bp Sesleria insularis QL-PLN-00-007 618 bp View
DQ353958.1 nt Catabrosa werdermannii voucher US:S... 1775 bp Catabrosa werdermannii QL-PLN-00-007 611 bp View
DQ353959.1 nt Puccinellia stricta voucher Peterso... 1808 bp Puccinellia stricta QL-PLN-00-007 611 bp View
DQ353960.1 nt Puccinellia glaucescens voucher Sor... 1773 bp Puccinellia glaucescens QL-PLN-00-007 611 bp View
DQ353962.1 nt Deschampsia brevifolia voucher Gill... 1796 bp Deschampsia brevifolia QL-PLN-00-007 613 bp View
DQ353964.1 nt Phleum pratense tRNA-Thr (trnT) gen... 1857 bp Phleum pratense QL-PLN-00-007 612 bp View
DQ353965.1 nt Beckmannia syzigachne voucher Soren... 1768 bp Beckmannia syzigachne QL-PLN-00-007 613 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.