Match details
Record ID: |
DQ353957.1 |
Database: |
nt |
Go to original record |
Description: |
Sesleria insularis voucher Soreng 3889 (BH) tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Sesleria insularis |
Original size: |
1969 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
935 |
1552 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gaattaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatctaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacccatat tataatatag gttctttatt
351 cttttttaga atgaaattgg aaatagaaat gattatgaaa taaaaaattc
401 agaatttttt tagaattatt gtgaatccat tccaatcgaa tatttagtaa
451 tcaaatcctt caattcaaag ttttgaggtc tttaaaaaag tggattaatc
501 ggacgaggac aaagagagag tcccattcta catgtcaata ctgacaacaa
551 tgaaatttct agtaaaagga aaatccgtcg actttataag tcgtgagggt
601 tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.