Match details
Record ID: |
DQ208879.1 |
Database: |
nt |
Go to original record |
Description: |
Caesalpinia oyamae isolate HUAJ2 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Erythrostemon oyamae |
Original size: |
1059 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
592 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgccgaca tttcttttcg gtagtaaagg aatccttcca
251 tctaaactcc agaaaagaaa ggatcaagga tgaacatata tatgtatact
301 gaaatattat ttcaattgat tagaccagac agacccaaaa tctctatttt
351 tgaatattta tatgacaaat gaaagatgtg aatagattcc aagttgaaga
401 aagaatcaaa tatttattga tcaaatcatt cattccatga tagtctgata
451 aatcttttga agaactgatt aatcggacga gaataaagat agagtcccat
501 tctacatgtc aataccgaca acaatgaaat ttatagtaag aggaaaatcc
551 gtcgacttta gaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.