Match details
Record ID: |
DQ208904.1 |
Database: |
nt |
Go to original record |
Description: |
Caesalpinia melanadenia isolate MEL0 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Erythrostemon melanadenius |
Original size: |
1073 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
591 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg cttattggat tgagccttgg tatggaactt
51 actaagtgag aactttcaaa ttcagagaaa ccctggaatt aacaatgggc
101 aatcctgagc caaatcctgt tttccgaaaa ccaataagag ttcagaaagg
151 gagaataaaa aaaggatagg tgcagagact caacggaagc tgttctaaca
201 aatggagttg acgacatttc ttttcgttag taaaggaatc cttccatcga
251 aactccagaa aagaaaggat caaggatgaa catatatata tgtatactga
301 aatcttattt caattgatta gaccagacag acccccaatc tctatttttt
351 aatatttata tgacaaatga aagatgtgaa tagattccaa gttgaagaaa
401 gaatcaacta tttattgatc aaatcattca ttccatgata gtctgataaa
451 tcttttgaag aactgattaa tcggacgaga ataaagatag agtcccattc
501 tacatgtcaa tactgacaac aatgaaattt atagtaagag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.