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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON858864.1 nt Isodon japonicus var. glaucocalyx c... 152660 bp Isodon japonicus var. glaucocalyx QL-PLN-00-007 554 bp View
ON858865.1 nt Isodon japonicus var. japonicus chl... 152674 bp Isodon japonicus var. japonicus QL-PLN-00-007 554 bp View
ON858868.1 nt Isodon grandifolius var. grandifoli... 152577 bp Isodon grandifolius var. grandifolius QL-PLN-00-007 533 bp View
ON858870.1 nt Isodon lophanthoides var. gracilifl... 152208 bp Isodon lophanthoides var. graciliflorus QL-PLN-00-007 533 bp View
ON858876.1 nt Isodon megathyrsus chloroplast, com... 152298 bp Isodon megathyrsus QL-PLN-00-007 554 bp View
ON858877.1 nt Isodon nervosus chloroplast, comple... 152291 bp Isodon nervosus QL-PLN-00-007 554 bp View
ON858881.1 nt Isodon parvifolius chloroplast, com... 152681 bp Isodon parvifolius QL-PLN-00-007 556 bp View
ON858886.1 nt Isodon rubescens chloroplast, compl... 152651 bp Isodon rubescens QL-PLN-00-007 555 bp View
ON858892.1 nt Isodon serra chloroplast, complete ... 152551 bp Isodon serra QL-PLN-00-007 554 bp View
ON858902.1 nt Isodon ternifolius chloroplast, com... 152820 bp Isodon ternifolius QL-PLN-00-007 554 bp View
ON858903.1 nt Isodon japonicus var. japonicus chl... 152684 bp Isodon japonicus var. japonicus QL-PLN-00-007 553 bp View
ON858906.1 nt Isodon umbrosus var. leucanthus chl... 152682 bp Isodon umbrosus var. leucanthus QL-PLN-00-007 554 bp View
ON858908.1 nt Isodon shikokianus var. occidentali... 152677 bp Isodon shikokianus var. occidentalis QL-PLN-00-007 554 bp View
ON858909.1 nt Isodon excisoides chloroplast, comp... 152600 bp Isodon excisoides QL-PLN-00-007 533 bp View
ON858914.1 nt Isodon rugosus chloroplast, complet... 152763 bp Isodon rugosus QL-PLN-00-007 555 bp View
ON858917.1 nt Isodon yuennanensis chloroplast, co... 152265 bp Isodon yuennanensis QL-PLN-00-007 533 bp View
ON858923.1 nt Isodon bulleyanus chloroplast, comp... 152281 bp Isodon bulleyanus QL-PLN-00-007 554 bp View
ON858925.1 nt Isodon loxothyrsus chloroplast, com... 152653 bp Isodon loxothyrsus QL-PLN-00-007 554 bp View
ON858926.1 nt Isodon coetsa var. coetsa chloropla... 152658 bp Isodon coetsa var. coetsa QL-PLN-00-007 533 bp View
ON872365.2 nt Oreocharis argyreia var. angustifol... 153493 bp Oreocharis argyreia var. angustifolia QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.