Match details
Record ID: |
ON858868.1 |
Database: |
nt |
Go to original record |
Description: |
Isodon grandifolius var. grandifolius chloroplast, complete genome. |
Taxon: |
Isodon grandifolius var. grandifolius |
Original size: |
152577 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47055 |
47587 |
+ |
533 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggataggtgc
151 agagactcaa tggaagctgt tctaacaaat gggagttgac tgcgctggta
201 gaggaatctt tccatggaaa ctttagaaag gatgaaggat aaacgcatca
251 tactatatca aaatcaaatg gttaatgatg gcccgaatct tttaatataa
301 aaaaatggaa aaattggtgt gaattgattc tacgttgaag aaaaaatcga
351 atattcatca actcattcgc tccatagtcc gatagatctt ttaaagaact
401 gattaatcgg acgagaataa agatagagtc ccattctaca tgctacatgt
451 caatatcggc aacaatgaaa tttatagtaa gaggaaaatc cgtcgacttt
501 aaaaatcgtg agggttcaag tccctctatc ccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.40e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
533 |
514 |
2.40e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.