JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

533 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggataggtgc
151   agagactcaa tggaagctgt tctaacaaat gggagttgac tgcgctggta
201   gaggaatctt tccatggaaa ctttagaaag gatgaaggat aaacgcatca
251   tactatatca aaatcaaatg gttaatgatg gcccgaatct tttaatataa
301   aaaaatggaa aaattggtgt gaattgattc tacgttgaag aaaaaatcga
351   atattcatca actcattcgc tccatagtcc gatagatctt ttaaagaact
401   gattaatcgg acgagaataa agatagagtc ccattctaca tgctacatgt
451   caatatcggc aacaatgaaa tttatagtaa gaggaaaatc cgtcgacttt
501   aaaaatcgtg agggttcaag tccctctatc ccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
ON858844.1	nt	Isodon coetsa var. cavaleriei chlor...	152674 bp	Isodon coetsa var. cavaleriei	QL-PLN-00-007	533 bp	View
ON858858.1	nt	Isodon sp. YPC-2018 chloroplast, co...	152633 bp	Isodon sp. YPC-2018	QL-PLN-00-007	533 bp	View
ON858863.1	nt	Isodon irroratus chloroplast, compl...	152681 bp	Isodon irroratus	QL-PLN-00-007	533 bp	View
ON858868.1	nt	Isodon grandifolius var. grandifoli...	152577 bp	Isodon grandifolius var. grandifolius	QL-PLN-00-007	533 bp	View
ON858909.1	nt	Isodon excisoides chloroplast, comp...	152600 bp	Isodon excisoides	QL-PLN-00-007	533 bp	View
ON858926.1	nt	Isodon coetsa var. coetsa chloropla...	152658 bp	Isodon coetsa var. coetsa	QL-PLN-00-007	533 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.