Match details
Record ID: |
ON858914.1 |
Database: |
nt |
Go to original record |
Description: |
Isodon rugosus chloroplast, complete genome. |
Taxon: |
Isodon rugosus |
Original size: |
152763 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47136 |
47690 |
+ |
555 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggttcaaaaa
151 acgaaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atgggagttg actgcgctgg tagaggaatc tttccatgga aactttagaa
251 aggatgaagg ataaacgcat ctattgaata ctatatcaaa tggttaatga
301 tggcccgaat cttttaatat gaaaaaatgg aaaaattggt gtgaattgat
351 tctacgttga agaaaaaatc gaatattcat caactcattc gctccatagt
401 ccgatagatc ttttaaagaa ctgattaatc ggacgagaat aaagatagag
451 tcccattcta catgctacat gtcaatatcg gcaacaatga aatttatagt
501 aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551 tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
555 |
536 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.