Amplicon details

Amplicon:

555 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggttcaaaaa
151   acgaaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201   atgggagttg actgcgctgg tagaggaatc tttccatgga aactttagaa
251   aggatgaagg ataaacgcat ctattgaata ctatatcaaa tggttaatga
301   tggcccgaat cttttaatat gaaaaaatgg aaaaattggt gtgaattgat
351   tctacgttga agaaaaaatc gaatattcat caactcattc gctccatagt
401   ccgatagatc ttttaaagaa ctgattaatc ggacgagaat aaagatagag
451   tcccattcta catgctacat gtcaatatcg gcaacaatga aatttatagt
501   aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551   tcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON858843.1 nt Isodon coetsa var. coetsa chloropla... 152745 bp Isodon coetsa var. coetsa QL-PLN-00-007 555 bp View
ON858914.1 nt Isodon rugosus chloroplast, complet... 152763 bp Isodon rugosus QL-PLN-00-007 555 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.