Match details
Record ID: |
ON858881.1 |
Database: |
nt |
Go to original record |
Description: |
Isodon parvifolius chloroplast, complete genome. |
Taxon: |
Isodon parvifolius |
Original size: |
152681 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47122 |
47677 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggttcaaaaa
151 acgaaaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201 aatgggagtt gactgcgctg gtagaggaat ctttccatgg aaactttaga
251 aaggatgaag gataaacgca tcatactata tcaaaatcaa atggttaatg
301 atggcccgaa tcttttaata taaaaaaatg gaaaaattgg tgtgaattga
351 ttctacgttg aagaaaaaat cgaatattca tcaactcatt cgctccatag
401 tccgatagat cttttaaaga actgattaat cggacgagaa taaagataga
451 gtcccattct acatgctaca tgtcaatatc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.