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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON641372.1 nt Ocimum basilicum isolate BPTPS180 v... 152407 bp Ocimum basilicum QL-PLN-00-007 549 bp View
ON641374.1 nt Origanum vulgare subsp. vulgare iso... 151814 bp Origanum vulgare subsp. vulgare QL-PLN-00-007 544 bp View
ON641375.1 nt Phlomis fruticosa isolate BPTPS185 ... 151073 bp Phlomis fruticosa QL-PLN-00-007 563 bp View
ON641379.1 nt Salvia officinalis isolate BPTPS198... 151163 bp Salvia officinalis QL-PLN-00-007 561 bp View
ON641381.1 nt Ocimum basilicum isolate BPTPS201 v... 152407 bp Ocimum basilicum QL-PLN-00-007 549 bp View
ON641383.1 nt Origanum vulgare subsp. vulgare iso... 151813 bp Origanum vulgare subsp. vulgare QL-PLN-00-007 544 bp View
ON684530.1 nt Thymus capitellatus isolate BPTPS02... 555 bp Thymus capitellatus QL-PLN-00-007 544 bp View
ON684531.1 nt Thymus carnosus isolate BPTPS025 tR... 555 bp Thymus carnosus QL-PLN-00-007 544 bp View
ON684533.1 nt Cistus ladanifer isolate BPTPS031 t... 599 bp Cistus ladanifer QL-PLN-00-007 588 bp View
ON684536.1 nt Thymus camphoratus isolate BPTPS045... 555 bp Thymus camphoratus QL-PLN-00-007 544 bp View
ON684537.1 nt Cistus ladanifer subsp. sulcatus is... 599 bp Cistus ladanifer subsp. sulcatus QL-PLN-00-007 588 bp View
ON684540.1 nt Plantago major isolate BPTPS058 tRN... 593 bp Plantago major QL-PLN-00-007 582 bp View
ON684542.1 nt Aloysia citrodora isolate BPTPS092 ... 573 bp Aloysia citrodora QL-PLN-00-007 562 bp View
ON684544.1 nt Mentha aquatica isolate BPTPS096 tR... 581 bp Mentha aquatica QL-PLN-00-007 570 bp View
ON684546.1 nt Salicornia fruticosa isolate BPTPS1... 608 bp Salicornia fruticosa QL-PLN-00-007 597 bp View
ON684547.1 nt Cymbopogon citratus isolate BPTPS14... 601 bp Cymbopogon citratus QL-PLN-00-007 525 bp View
ON684548.1 nt Thymus vulgaris isolate BPTPS145 tR... 555 bp Thymus vulgaris QL-PLN-00-007 544 bp View
ON684549.1 nt Satureja montana isolate BPTPS148 t... 574 bp Satureja montana QL-PLN-00-007 563 bp View
ON684550.1 nt Thymus x citriodorus isolate BPTPS1... 555 bp Thymus x citriodorus QL-PLN-00-007 544 bp View
ON684553.1 nt Mentha cervina isolate BPTPS154 tRN... 591 bp Mentha cervina QL-PLN-00-007 580 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.