Match details
Record ID: |
ON684537.1 |
Database: |
nt |
Go to original record |
Description: |
Cistus ladanifer subsp. sulcatus isolate BPTPS047 tRNA-Leu (trnL) gene, complete sequence; chloroplast. |
Taxon: |
Cistus ladanifer subsp. sulcatus |
Original size: |
599 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
598 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agcaggtcaa aaagcaataa
151 aaaataggat aggtgcagag actcaatgga agttattcaa acaaatggga
201 ttgaatggct ttgcgttggt aaaagaatac ttctatcaaa actcaagcaa
251 ggataaacat ataaaataaa ctatttcaag aaaaaaatag gaatggggta
301 cctattcttt tgatttactt tataagttgt agcaaaaaga attttataca
351 aaatcaaaag aatcattctg aatccattgc aagttaatga atagaatatt
401 cattaataaa aaagaaaacc attcactcca taatctgata aatcttttga
451 aaaacagatt aatcggacga gaataaagat agagtcccgt tctacatgtc
501 aatatcaata ccgacaacaa tgaaagttat agtaagagga aaatccgtcg
551 actttaaaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.