Match details
Record ID: |
ON641381.1 |
Database: |
nt |
Go to original record |
Description: |
Ocimum basilicum isolate BPTPS201 voucher LISE:96511 chloroplast, complete genome. |
Taxon: |
Ocimum basilicum |
Original size: |
152407 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46959 |
47507 |
+ |
549 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aagttcaaaa
151 aacgaaaaaa aaaaaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg gagttgactg cgctggtaga ggaatctttc catggaaact
251 ttcgaaagga tgaaggataa acgcatctat tgaatactat atcaaatggt
301 taatgatggc ccaaatcttt taatatgaaa aaatggaaaa attggtgtga
351 attgattcta cgttgaagaa aaaatcaaat attcatcaac tcattcgctc
401 catagtccga tagataaaga actgattaat cggacgagaa taaagataga
451 gtcccattct acatgtcaat atcggcaaca atgaaattta tagtaagagg
501 aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc tctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
549 |
530 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.