Match details
Record ID: |
ON684540.1 |
Database: |
nt |
Go to original record |
Description: |
Plantago major isolate BPTPS058 tRNA-Leu (trnL) gene, complete sequence; chloroplast. |
Taxon: |
Plantago major |
Original size: |
593 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
592 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactagg tgataacttt caaattcaga gaaaccccgg aattaaaaaa
101 aaatgggcaa tcctgagcca aatcctgtct tctcaaaata aaggttcata
151 aagcgaaaag gggataggtg cagagactcg atggaagctg ttctaaaaca
201 aatggagttg actgcgttgg tagatgaatc ttttcatcga aacttcagaa
251 aagatgaagg ataaacggat ctattgaata ctaaaatatc taaaaaaaag
301 gaatgacggc ccgagtctgc atctgtattt ttttagatga aaaatagaag
351 aattggtggg aattgattcc acattcaaga aagaatcgaa tattcattca
401 tcaaatcacc ccactccgta gtctgatagt tttagtcttt ttttaaagaa
451 ctgattaatt aattggacga gaataaagat agagtcccgt tctacatgtc
501 aataccgaca gcaatgaaat ttatagtaat aggaaaatcc gtcgactttt
551 aaaatcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.