European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ618352.1 nt Fallopia aubertii chloroplast, comp... 162393 bp Fallopia aubertii QL-PLN-00-007 619 bp View
MZ636524.1 nt Fagopyrum dibotrys chloroplast, com... 159325 bp Fagopyrum dibotrys QL-PLN-00-007 577 bp View
MZ636532.1 nt Trichosanthes kirilowii chloroplast... 156568 bp Trichosanthes kirilowii QL-PLN-00-007 587 bp View
MZ636534.1 nt Diospyros rhombifolia chloroplast, ... 157775 bp Diospyros rhombifolia QL-PLN-00-007 586 bp View
MZ636545.1 nt Dianthus chinensis chloroplast, com... 149640 bp Dianthus chinensis QL-PLN-00-007 617 bp View
MZ636547.1 nt Prunella vulgaris chloroplast, comp... 151514 bp Prunella vulgaris QL-PLN-00-007 574 bp View
MZ636550.1 nt Salvia officinalis chloroplast, com... 151163 bp Salvia officinalis QL-PLN-00-007 561 bp View
MZ648185.1 nt Phlomoides younghusbandii chloropla... 151769 bp Phlomoides younghusbandii QL-PLN-00-007 562 bp View
MZ680502.1 nt Alangium kurzii chloroplast, comple... 156674 bp Alangium kurzii QL-PLN-00-007 584 bp View
MZ681865.1 nt Dendrocalamus farinosus chloroplast... 139458 bp Dendrocalamus farinosus QL-PLN-00-007 613 bp View
MZ707522.1 nt Nicotiana tabacum chloroplast, comp... 155943 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
MZ748477.1 nt Persicaria perfoliata chloroplast, ... 160680 bp Persicaria perfoliata QL-PLN-00-007 601 bp View
MZ751064.1 nt Lilium concolor var. pulchellum chl... 152626 bp Lilium concolor var. pulchellum QL-PLN-00-007 616 bp View
MZ779005.1 nt Plantago asiatica chloroplast, comp... 165045 bp Plantago asiatica QL-PLN-00-007 582 bp View
MZ855771.1 nt UNVERIFIED: Salvia liguliloba chlor... 151490 bp Salvia liguliloba QL-PLN-00-007 529 bp View
MZ888772.1 nt Ixora x williamsii cultivar Dwarf A... 154663 bp Ixora x williamsii QL-PLN-00-007 565 bp View
MZ902354.1 nt Impatiens balsamina chloroplast, co... 152518 bp Impatiens balsamina QL-PLN-00-007 596 bp View
MZ905454.1 nt Fargesia qinlingensis chloroplast, ... 139641 bp Fargesia qinlingensis QL-PLN-00-007 614 bp View
MZ905456.1 nt Arundinaria fargesii chloroplast, c... 139606 bp Arundinaria fargesii QL-PLN-00-007 614 bp View
MZ905465.1 nt Wenchengia alternifolia isolate VN ... 152398 bp Wenchengia alternifolia QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.