Match details
Record ID: |
MZ636532.1 |
Database: |
nt |
Go to original record |
Description: |
Trichosanthes kirilowii chloroplast, complete genome. |
Taxon: |
Trichosanthes kirilowii |
Original size: |
156568 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49562 |
50148 |
+ |
587 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaaaaaaagg gtaggtgcag
151 agactcaatg gaagctgttc taacaaatgg agttgactac gttgcgttag
201 taaaggaatg aatccttcta tcgaaactcc agaaaagatg aaagataaac
251 gtattacgta ctgaaatact atttgattaa tgacaacccg aatctccatt
301 tttttttttt ttttatttat atacaaaatg atatataaaa atgaacgaat
351 tgttctgaat cgattccaat atctccaagt tgaaaaaaga atcgaatatt
401 cattgatcaa atcatttact ccatcataca tagtctgata gatcttttga
451 agaactgatt aatcagatgc gaatagaata aagatagagt cccattctac
501 atgtcaatac cgacaaaaat gaaatttata gtaagaggaa aatccgtcga
551 ctttaaaaat cgtgagggtt caagtccctc tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
587 |
568 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.