European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ151337.1 nt Oryza glaberrima cultivar RAM3 chlo... 134602 bp Oryza glaberrima QL-PLN-00-007 615 bp View
MZ151501.1 nt Gardenia jasminoides isolate GJ chl... 154954 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
MZ151502.1 nt Gardenia jasminoides var. grandiflo... 155098 bp Gardenia jasminoides var. grandiflora QL-PLN-00-007 550 bp View
MZ159248.1 nt Bambusa oldhamii voucher JXAU00001 ... 139667 bp Bambusa oldhamii QL-PLN-00-007 614 bp View
MZ160998.1 nt Vatica odorata chloroplast, complet... 151493 bp Vatica odorata QL-PLN-00-007 581 bp View
MZ169307.1 nt Trema domingense chloroplast, parti... 156671 bp Trema domingense QL-PLN-00-007 592 bp View
MZ188968.1 nt Lilium primulinum var. burmanicum c... 152309 bp Lilium primulinum var. burmanicum QL-PLN-00-007 609 bp View
MZ188973.1 nt Trema domingense voucher SIU:Garwoo... 156617 bp Trema domingense QL-PLN-00-007 589 bp View
MZ221832.1 nt Ixora chinensis chloroplast, comple... 154787 bp Ixora chinensis QL-PLN-00-007 565 bp View
MZ239203.1 nt Stylidium debile chloroplast, compl... 150105 bp Stylidium debile QL-PLN-00-007 586 bp View
MZ239204.1 nt Stylidium petiolare chloroplast, co... 150998 bp Stylidium petiolare QL-PLN-00-007 596 bp View
MZ242235.1 nt Scoparia dulcis chloroplast, comple... 153701 bp Scoparia dulcis QL-PLN-00-007 574 bp View
MZ274087.1 nt Diospyros crassiflora voucher BR<BE... 157874 bp Diospyros crassiflora QL-PLN-00-007 585 bp View
MZ274088.1 nt Diospyros mespiliformis voucher BR<... 157246 bp Diospyros mespiliformis QL-PLN-00-007 562 bp View
MZ274150.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274151.1 nt Leonurus cardiaca chloroplast, comp... 151831 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274152.1 nt Leonurus cardiaca chloroplast, comp... 151831 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274153.1 nt Leonurus cardiaca chloroplast, comp... 151761 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274154.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274155.1 nt Leonurus cardiaca chloroplast, comp... 151815 bp Leonurus cardiaca QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.