Match details
Record ID: |
MZ188968.1 |
Database: |
nt |
Go to original record |
Description: |
Lilium primulinum var. burmanicum chloroplast, complete genome. |
Taxon: |
Lilium primulinum var. burmanicum |
Original size: |
152309 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45638 |
46246 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaattacg gagaggatgc ccaccctata tacgtatata
301 tacatactga catagtaaac gattgattaa tcgcggcccg aatccattat
351 aatatatata tatatgaaaa atttaagagt tattctaaat ctattccata
401 ttccaatcaa agtttaagga agaatcgaat attcagtgat caaattattc
451 attccagagt ctgtatagat ctttttaaaa actgattatt cggacgagaa
501 taaagagaga gtcccattct acgtgtcaat accgacaaca atgaaattta
551 tagtaaaagg aaaatccgtc gactttataa gtcgtgaggg ttcaagtccc
601 tctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.