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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW559065.1 nt Averrhoa bilimbi voucher J.Wen10211... 983 bp Averrhoa bilimbi QL-PLN-00-007 574 bp View
MW599988.1 nt Clerodendranthus spicatus chloropla... 152155 bp Clerodendranthus spicatus QL-PLN-00-007 546 bp View
MW646089.1 nt Amaranthus retroflexus voucher 2012... 150710 bp Amaranthus retroflexus QL-PLN-00-007 595 bp View
MW672445.1 nt Echinochloa haploclada chloroplast,... 139844 bp Echinochloa haploclada QL-PLN-00-007 621 bp View
MW689264.1 nt Vitex negundo chloroplast, complete... 154471 bp Vitex negundo QL-PLN-00-007 559 bp View
MW691144.1 nt Isodon japonicus chloroplast, compl... 152298 bp Isodon japonicus QL-PLN-00-007 554 bp View
MW699773.1 nt Trikeraia hookeri var. hookeri chlo... 137696 bp Trikeraia hookeri var. hookeri QL-PLN-00-007 599 bp View
MW711321.1 nt Oryza rufipogon isolate Or135 chlor... 134963 bp Oryza rufipogon QL-PLN-00-007 615 bp View
MW711322.1 nt Oryza rufipogon isolate Or136 chlor... 134921 bp Oryza rufipogon QL-PLN-00-007 615 bp View
MW719052.1 nt Marsdenia flavescens chloroplast, c... 161700 bp Leichhardtia flavescens QL-PLN-00-007 550 bp View
MW719053.1 nt Hoya monetteae chloroplast, complet... 176921 bp Hoya monetteae QL-PLN-00-007 556 bp View
MW719054.1 nt Hoya exilis chloroplast, complete g... 178616 bp Hoya exilis QL-PLN-00-007 550 bp View
MW719055.1 nt Hoya lyi chloroplast, complete genome. 176567 bp Hoya lyi QL-PLN-00-007 550 bp View
MW719056.1 nt Jasminanthes maingayi chloroplast, ... 161660 bp Jasminanthes maingayi QL-PLN-00-007 550 bp View
MW719058.1 nt Hoya lithophytica chloroplast, comp... 176580 bp Hoya lithophytica QL-PLN-00-007 550 bp View
MW719060.1 nt Hoya omlorii chloroplast, complete ... 178525 bp Hoya omlorii QL-PLN-00-007 550 bp View
MW719061.1 nt Hoya ignorata chloroplast, complete... 175892 bp Hoya ignorata QL-PLN-00-007 550 bp View
MW719062.1 nt Papuahoya urniflora chloroplast, co... 178400 bp Papuahoya urniflora QL-PLN-00-007 550 bp View
MW719063.1 nt Hoya megalaster chloroplast, comple... 178169 bp Hoya megalaster QL-PLN-00-007 550 bp View
MW719064.1 nt Hoya coronaria chloroplast, partial... 178895 bp Hoya coronaria QL-PLN-00-007 550 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.