Match details
Record ID: |
MW672445.1 |
Database: |
nt |
Go to original record |
Description: |
Echinochloa haploclada chloroplast, complete genome. |
Taxon: |
Echinochloa haploclada |
Original size: |
139844 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48181 |
48801 |
+ |
621 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tgttaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaagaaaagg ataggtgcag agactcaatg gaagttgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtggaact ccctcgaaat
251 tagagaaaga agggctttat acatctaata cacacgtata gatactgaca
301 tagcaaacga ttaatcacgg aacccatatc ataatatagg ttctttattt
351 gatttttttt agaatgaaat ttggaatgat tatgaaatag aaaattctga
401 atttttttag aattattgtg aatccattcc aatcgaatat tgagtaatca
451 aatccttcaa ttcattgttt tcgagatctt tactttaaaa aagtggatta
501 atcgaacgag gataaagaga gagtcccatt ctacatgtca atactgacaa
551 caatgaaatt tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag
601 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.80e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
621 |
602 |
2.80e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.