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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT083931.1 nt Elsholtzia densa var. ianthina plas... 149118 bp Elsholtzia densa var. ianthina QL-PLN-00-007 556 bp View
MT093221.1 nt Poa annua isolate 84 trnL-trnF inte... 963 bp Poa annua QL-PLN-00-007 616 bp View
MT094313.1 nt Arctagrostis latifolia subsp. latif... 135682 bp Arctagrostis latifolia subsp. latifolia QL-PLN-00-007 620 bp View
MT094442.1 nt Paspalum laeve voucher T. Rochow s.... 141643 bp Paspalum laeve QL-PLN-00-007 617 bp View
MT094443.1 nt Paspalum millegrana voucher W. Dunn... 144079 bp Paspalum millegrana QL-PLN-00-007 617 bp View
MT094444.1 nt Paspalum notatum voucher S.V. Burke... 152500 bp Paspalum notatum QL-PLN-00-007 617 bp View
MT094446.1 nt Schmidtia pappophoroides plastid, c... 133953 bp Schmidtia pappophoroides QL-PLN-00-007 621 bp View
MT119357.1 nt Parapholis strigosa plastid, partia... 136895 bp Parapholis strigosa QL-PLN-00-007 614 bp View
MT150102.1 nt Dianthus fruticosus subsp. amorginu... 149623 bp Dianthus fruticosus subsp. amorginus QL-PLN-00-007 614 bp View
MT150105.1 nt Dianthus fruticosus subsp. fruticos... 149253 bp Dianthus fruticosus subsp. fruticosus QL-PLN-00-007 618 bp View
MT150107.1 nt Dianthus juniperinus subsp. aciphyl... 149607 bp Dianthus juniperinus subsp. aciphyllus QL-PLN-00-007 619 bp View
MT156363.1 nt Salvia adenophora chloroplast, comp... 151072 bp Salvia adenophora QL-PLN-00-007 564 bp View
MT156364.1 nt Salvia curviflora chloroplast, comp... 150986 bp Salvia curviflora QL-PLN-00-007 564 bp View
MT156365.1 nt Salvia microphylla chloroplast, com... 150873 bp Salvia microphylla QL-PLN-00-007 564 bp View
MT156366.1 nt Salvia iodantha chloroplast, comple... 150814 bp Salvia iodantha QL-PLN-00-007 564 bp View
MT156368.1 nt Salvia pansamalensis chloroplast, c... 150988 bp Salvia pansamalensis QL-PLN-00-007 564 bp View
MT156369.1 nt Salvia tubifera chloroplast, comple... 150977 bp Salvia tubifera QL-PLN-00-007 564 bp View
MT156370.1 nt Salvia semiatrata chloroplast, comp... 151036 bp Salvia semiatrata QL-PLN-00-007 564 bp View
MT156371.1 nt Salvia azurea chloroplast, complete... 150959 bp Salvia azurea QL-PLN-00-007 564 bp View
MT156372.1 nt Salvia karwinskii chloroplast, comp... 150907 bp Salvia karwinskii QL-PLN-00-007 564 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.