Match details
Record ID: |
MT083931.1 |
Database: |
nt |
Go to original record |
Description: |
Elsholtzia densa var. ianthina plastid, complete genome. |
Taxon: |
Elsholtzia densa var. ianthina |
Original size: |
149118 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45236 |
45791 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccccgg aattaataaa
101 aacgggcaat cctgagccaa atcctatttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa ggggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctacgctggt agaggaatct ttccatgcaa actttagaaa
251 ggatgaagga taaacggatc tagtgaatac tatatcaaat gattaatgat
301 gggcccgaat ctgttttttt agtttaatat gaaaatggaa aaatttgtgt
351 gaattgattc cacgttgaag aaaaatttga atattcatca cctcgttcac
401 tccatagtcc gatatatctt ttaaagaact gattaatcgg acaagaataa
451 agatagagtc ccattctaca cgtcaatacc ggcaacaatg aaatttctag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.