Match details
Record ID: |
MT156365.1 |
Database: |
nt |
Go to original record |
Description: |
Salvia microphylla chloroplast, complete genome. |
Taxon: |
Salvia microphylla |
Original size: |
150873 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46374 |
46937 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaacaaa acaaaggttc
151 aaaaaacgaa aaacaaggga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgactgcg ccggtagagg aatttttcca cggaaacttt
251 agaaaggatg aaggataaac gcacctattg aatactatat caaatgatta
301 ataattacta atgttgaccc caatctgttt tttaatatga aaatggaaaa
351 atcgatgtga atttatttcc cgttgaagaa taaatcgaat attcatcaac
401 tcattcactc catagttcga tagatctttt aaagaactta ttaatcggac
451 gagaataaag atagagtccc attctacatg tcaataccgg caacaatgaa
501 atttatagta agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa
551 gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.