European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK441676.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 957 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 541 bp View
MK441677.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 969 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 549 bp View
MK441678.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 967 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 547 bp View
MK441679.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 965 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 549 bp View
MK441680.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 969 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 549 bp View
MK493294.1 nt Lilium brownii chloroplast, complet... 152648 bp Lilium brownii QL-PLN-00-007 607 bp View
MK493295.1 nt Lilium pensylvanicum chloroplast, c... 152058 bp Lilium pensylvanicum QL-PLN-00-007 612 bp View
MK493296.1 nt Lilium distichum chloroplast, compl... 152520 bp Lilium distichum QL-PLN-00-007 618 bp View
MK493298.1 nt Lilium lophophorum chloroplast, com... 152382 bp Lilium lophophorum QL-PLN-00-007 609 bp View
MK493300.1 nt Lilium nanum chloroplast, complete ... 152417 bp Lilium nanum QL-PLN-00-007 610 bp View
MK558819.1 nt Plantago sp. JP-2021 chloroplast, c... 164946 bp Plantago sp. JP-2021 QL-PLN-00-007 583 bp View
MK570591.1 nt Pseudognaphalium oligandrum voucher... 152797 bp Pseudognaphalium oligandrum QL-PLN-00-007 521 bp View
MK570592.1 nt Pseudognaphalium sandwicensium var.... 152948 bp Pseudognaphalium sandwicensium var. molokaiense QL-PLN-00-007 521 bp View
MK570593.1 nt Pseudognaphalium sandwicensium var.... 152771 bp Pseudognaphalium sandwicensium var. hawaiiense QL-PLN-00-007 521 bp View
MK570594.1 nt Pseudognaphalium sandwicensium vouc... 152995 bp Pseudognaphalium sandwicensium QL-PLN-00-007 521 bp View
MK570595.1 nt Pseudognaphalium affine voucher CHR... 152627 bp Pseudognaphalium affine QL-PLN-00-007 521 bp View
MK570596.1 nt Gamochaeta coarctata voucher CHR:65... 152035 bp Gamochaeta coarctata QL-PLN-00-007 526 bp View
MK570597.1 nt Pseudognaphalium sp. RS-2020 vouche... 152719 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570598.1 nt Pseudognaphalium sp. CHR654973 vouc... 152947 bp Pseudognaphalium sp. CHR654973 QL-PLN-00-007 521 bp View
MK570599.1 nt Pseudognaphalium sp. RS-2020 vouche... 152805 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.