Match details
Record ID: |
MK570597.1 |
Database: |
nt |
Go to original record |
Description: |
Pseudognaphalium sp. RS-2020 voucher CHR493823 plastid, partial genome. |
Taxon: |
Pseudognaphalium sp. RS-2020 |
Original size: |
152719 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47310 |
47830 |
+ |
521 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aatcaaaagg ataggtgcag agactcgatg gaagctgttc
201 taacaaatgg agttgattgt cttacattgg tagagaaatc cttctataga
251 aacttcagaa aagatgaagg ataaacctgt atacataata gagatacaga
301 agaattgata tgaatcgatt ccatattgaa gaaagaatcg aatattcatt
351 gatcaaacca ttcactccat aatctgatag atcttttgaa gaactgatta
401 atcggacgag aataaagata gagtcccgtc ctacatgtca ataccggcaa
451 caatgaaatt tatagtaaga ggaaaatccg tcgatttcaa aaatcatgag
501 ggttcaagtc cctctatccc c
View other 17 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.34e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
521 |
502 |
2.34e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.