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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 521 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa acaaaggttc
151   agaaagcgaa aatcaaaagg ataggtgcag agactcgatg gaagctgttc
201   taacaaatgg agttgattgt cttacattgg tagagaaatc cttctataga
251   aacttcagaa aagatgaagg ataaacctgt atacataata gagatacaga
301   agaattgata tgaatcgatt ccatattgaa gaaagaatcg aatattcatt
351   gatcaaacca ttcactccat aatctgatag atcttttgaa gaactgatta
401   atcggacgag aataaagata gagtcccgtc ctacatgtca ataccggcaa
451   caatgaaatt tatagtaaga ggaaaatccg tcgatttcaa aaatcatgag
501   ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK570593.1 nt Pseudognaphalium sandwicensium var.... 152771 bp Pseudognaphalium sandwicensium var. hawaiiense QL-PLN-00-007 521 bp View
MK570594.1 nt Pseudognaphalium sandwicensium vouc... 152995 bp Pseudognaphalium sandwicensium QL-PLN-00-007 521 bp View
MK570597.1 nt Pseudognaphalium sp. RS-2020 vouche... 152719 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570598.1 nt Pseudognaphalium sp. CHR654973 vouc... 152947 bp Pseudognaphalium sp. CHR654973 QL-PLN-00-007 521 bp View
MK570599.1 nt Pseudognaphalium sp. RS-2020 vouche... 152805 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570600.1 nt Pseudognaphalium sp. AK363506 vouch... 152886 bp Pseudognaphalium sp. AK363506 QL-PLN-00-007 521 bp View
MK570601.1 nt Pseudognaphalium sp. CHR639461 plas... 152885 bp Pseudognaphalium sp. CHR639461 QL-PLN-00-007 521 bp View
MK570602.1 nt Pseudognaphalium sp. RS-2020 vouche... 152691 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570603.1 nt Pseudognaphalium sp. CHR646720 vouc... 152878 bp Pseudognaphalium sp. CHR646720 QL-PLN-00-007 521 bp View
MK570604.1 nt Pseudognaphalium luteoalbum plastid. 152895 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK570606.1 nt Pseudognaphalium sp. RS-2020 vouche... 152868 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570607.1 nt Pseudognaphalium sp. CHR655028 vouc... 152796 bp Pseudognaphalium sp. CHR655028 QL-PLN-00-007 521 bp View
MK570608.1 nt Pseudognaphalium californicum vouch... 152769 bp Pseudognaphalium californicum QL-PLN-00-007 521 bp View
MK570609.1 nt Pseudognaphalium luteoalbum voucher... 152701 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MT271604.1 nt Pseudognaphalium luteoalbum voucher... 153072 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
OY730200.1 nt Pseudognaphalium luteoalbum genome ... 153410 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK570605.1 nt Pseudognaphalium luteoalbum voucher... 152899 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK771096.1 nt Pseudognaphalium sp. CHR639322 chlo... 152903 bp Pseudognaphalium sp. CHR639322 QL-PLN-00-007 521 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.