Match details
Record ID: |
MK570591.1 |
Database: |
nt |
Go to original record |
Description: |
Pseudognaphalium oligandrum voucher BC:867618 plastid, partial genome. |
Taxon: |
Pseudognaphalium oligandrum |
Original size: |
152797 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47389 |
47909 |
+ |
521 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aatcaaaagg ataggtgcag agactcgatg gaagctgttc
201 taacaaatgg agttgattgt cttacattgg tagagaaatc cttctatgga
251 aacttcagaa aagatgaagg ataaacctgt atacataata gagatacaga
301 agaattgata ggaatcgatt ccatattgaa gaaagaatcg aatattcatt
351 gatcaaacca ttcactccat aatctgatag atcttttgaa gaactgatta
401 atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
451 caatgaaatt tatagtaaga ggaaaatccg tcgatttcaa aaatcatgag
501 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.34e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
521 |
502 |
2.34e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.