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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG831855.1 nt Adenocalymma gracielzae chloroplast... 155887 bp Adenocalymma gracielzae QL-PLN-00-007 566 bp View
MG831856.1 nt Adenocalymma grandifolium chloropla... 147080 bp Adenocalymma grandifolium QL-PLN-00-007 567 bp View
MG831857.1 nt Adenocalymma hatschbachii chloropla... 155256 bp Adenocalymma hatschbachii QL-PLN-00-007 568 bp View
MG831859.1 nt Adenocalymma juliae chloroplast, pa... 152415 bp Adenocalymma juliae QL-PLN-00-007 569 bp View
MG831860.1 nt Adenocalymma macrophyllum chloropla... 152303 bp Adenocalymma macrophyllum QL-PLN-00-007 567 bp View
MG831863.1 nt Adenocalymma paulistarum chloroplas... 141133 bp Adenocalymma paulistarum QL-PLN-00-007 567 bp View
MG831864.1 nt Adenocalymma pubescens chloroplast,... 151953 bp Adenocalymma pubescens QL-PLN-00-007 567 bp View
MG831865.1 nt Adenocalymma scabriusculum chloropl... 158482 bp Adenocalymma scabriusculum QL-PLN-00-007 568 bp View
MG831866.1 nt Adenocalymma schomburgkii chloropla... 138528 bp Adenocalymma schomburgkii QL-PLN-00-007 568 bp View
MG831867.1 nt Adenocalymma subincanum chloroplast... 115187 bp Adenocalymma subincanum QL-PLN-00-007 566 bp View
MG831868.1 nt Adenocalymma subsessilifolium chlor... 155925 bp Adenocalymma subsessilifolium QL-PLN-00-007 567 bp View
MG831870.1 nt Adenocalymma ubatubense chloroplast... 115404 bp Adenocalymma ubatubense QL-PLN-00-007 567 bp View
MG831871.1 nt Adenocalymma validum chloroplast, p... 146074 bp Adenocalymma validum QL-PLN-00-007 566 bp View
MG831872.1 nt Anemopaegma arvense chloroplast, pa... 165925 bp Anemopaegma arvense QL-PLN-00-007 566 bp View
MG831873.1 nt Cuspidaria floribunda chloroplast, ... 137727 bp Cuspidaria floribunda QL-PLN-00-007 566 bp View
MG831875.1 nt Fridericia platyphylla chloroplast,... 127741 bp Fridericia platyphylla QL-PLN-00-007 566 bp View
MG831877.1 nt Podranea ricasoliana chloroplast, p... 154982 bp Podranea ricasoliana QL-PLN-00-007 565 bp View
MG831879.1 nt Sampaiella trichoclada chloroplast,... 155506 bp Sampaiella trichoclada QL-PLN-00-007 565 bp View
MG836505.1 nt Amaranthus hypochondriacus voucher ... 150523 bp Amaranthus hypochondriacus QL-PLN-00-007 595 bp View
MG836506.1 nt Amaranthus hybridus subsp. cruentus... 150757 bp Amaranthus cruentus QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.