Match details
Record ID: |
MG831857.1 |
Database: |
nt |
Go to original record |
Description: |
Adenocalymma hatschbachii chloroplast, partial genome. |
Taxon: |
Adenocalymma hatschbachii |
Original size: |
155256 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47343 |
47910 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt cttaaaacaa aggttcagaa
151 aaggaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgccttggta gaggaatctt tccatcgaaa cttcagaaag
251 gatgaaggat aaacgtatct attgaatact atatcaatag attagtgata
301 gcccgaatct gtatctgtat ttttttttat agtatatgaa aaatggaaga
351 attagtgtga attgattaca cattgaagaa agaatcgaat attcattcat
401 caaatcattc actccatagt ccgatagttc ttttaaagaa ctgattaagc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ccggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg acttttaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.