Match details
Record ID: |
MG836506.1 |
Database: |
nt |
Go to original record |
Description: |
Amaranthus hybridus subsp. cruentus voucher PI566897 chloroplast, complete genome. |
Taxon: |
Amaranthus cruentus |
Original size: |
150757 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47641 |
48234 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggag
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggtaat cctgagccaa ctcctttttc aaaagtaaaa aaaaaaaata
151 cggattcaga aagcaagaat aaaaaaaagg ataggtgcag agactcaaag
201 gaagctgttc taacaaatgg agttgattgt gctgggttgt tcgaaattaa
251 tgacacttcg aatctattct gtatttctat ttttagaatt tttagatatt
301 tcttatttct agataatata gaatatgaaa ttttctagaa ataaaaatga
351 atatgaaaaa atggaagaat ttttgtgact ctatttcaag ttgaaaaaag
401 aatcaaatat tcatcaaatc attcactcca tagtctgata gatctttctt
451 tgaaagaacc ggttaatcgg ttactcggac gagaataaag atagagtccc
501 attatacatg tcaatactga caacaatgaa atttatagta cgaggaaaat
551 ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.