Match details
Record ID: |
MG831877.1 |
Database: |
nt |
Go to original record |
Description: |
Podranea ricasoliana chloroplast, partial genome. |
Taxon: |
Podranea ricasoliana |
Original size: |
154982 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46985 |
47549 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaatcg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttgactgcgt tggtagagga atctttccat cgaaacttca
251 gaaaggatga aggataaacg tatctattga atactatatc aaatgattaa
301 tgatggcccg aatccgtatc tgtatttttt tctatgaaaa tggaagaatt
351 ggtgtgaatt gattccacat tgaagaaaga atcgaatatt cattcatcaa
401 atcattcact ccatagtccg atagttcttt taaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.