Match details
Record ID: |
MG831856.1 |
Database: |
nt |
Go to original record |
Description: |
Adenocalymma grandifolium chloroplast, partial genome. |
Taxon: |
Adenocalymma grandifolium |
Original size: |
147080 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
40149 |
40715 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt cttaaaacaa aggttcagaa
151 aaggaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgccttggta gaggaatctt tccatcgaaa cttcagaaag
251 gatgaaggat aaacgtatct attgaatact atatcaatag attagtgata
301 gcccgaatct gtatctgtat tttttttata gtatatgaaa aatggaagaa
351 ttagtgtgaa ttgattacac attgaagaaa gaatcgaata ttcattcatc
401 aaatcattca ctccatagtc cgatagttct tttaaagaac tgattaagcg
451 gacgagaata aagatagagt cccattctac atgtcaatac cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga cttttaaaat cgtgagggtt
551 caagtccctc tatcccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.