JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

567 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctttttt cttaaaacaa aggttcagaa
151   aaggaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201   tggagttggc tgccttggta gaggaatctt tccatcgaaa cttcagaaag
251   gatgaaggat aaacgtatct attgaatact atatcaatag attagtgata
301   gcccgaatct gtatctgtat tttttttata gtatatgaaa aatggaagaa
351   ttagtgtgaa ttgattacac attgaagaaa gaatcgaata ttcattcatc
401   aaatcattca ctccatagtc cgatagttct tttaaagaac tgattaagcg
451   gacgagaata aagatagagt cccattctac atgtcaatac cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga cttttaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
MG831845.1	nt	Adenocalymma cauliflorum chloroplas...	82092 bp	Adenocalymma cauliflorum	QL-PLN-00-007	567 bp	View
MG831841.1	nt	Adenocalymma acutissimum chloroplas...	154114 bp	Adenocalymma acutissimum	QL-PLN-00-007	567 bp	View
MG831860.1	nt	Adenocalymma macrophyllum chloropla...	152303 bp	Adenocalymma macrophyllum	QL-PLN-00-007	567 bp	View
MG831854.1	nt	Adenocalymma gibbosum chloroplast, ...	143011 bp	Adenocalymma gibbosum	QL-PLN-00-007	567 bp	View
MG831856.1	nt	Adenocalymma grandifolium chloropla...	147080 bp	Adenocalymma grandifolium	QL-PLN-00-007	567 bp	View
MG831870.1	nt	Adenocalymma ubatubense chloroplast...	115404 bp	Adenocalymma ubatubense	QL-PLN-00-007	567 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.