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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG052613.1 nt Stipa tianschanica var. gobica vouc... 137847 bp Stipa tianschanica var. gobica QL-PLN-00-007 598 bp View
MG182422.1 nt Nicotiana attenuata chloroplast, co... 155914 bp Nicotiana attenuata QL-PLN-00-007 571 bp View
MG211821.1 nt Fritillaria karelinii isolate CBX34... 151764 bp Fritillaria karelinii QL-PLN-00-007 605 bp View
MG252500.1 nt Oryza sativa cultivar N22 voucher I... 134503 bp Oryza sativa QL-PLN-00-007 615 bp View
MG524990.1 nt Cornus capitata chloroplast, comple... 157200 bp Cornus capitata QL-PLN-00-007 588 bp View
MG524996.1 nt Alangium chinense chloroplast, comp... 156684 bp Alangium chinense QL-PLN-00-007 584 bp View
MG524998.1 nt Cornus capitata chloroplast, comple... 157200 bp Cornus capitata QL-PLN-00-007 588 bp View
MG525003.1 nt Alangium alpinum chloroplast, compl... 156673 bp Alangium alpinum QL-PLN-00-007 584 bp View
MG525004.1 nt Cornus controversa chloroplast, com... 158668 bp Cornus controversa QL-PLN-00-007 595 bp View
MG573056.1 nt Tiquilia plicata voucher TRTE:Stefa... 154559 bp Tiquilia plicata QL-PLN-00-007 582 bp View
MG593046.1 nt Dysosma versipellis chloroplast, co... 156840 bp Dysosma versipellis QL-PLN-00-007 541 bp View
MG593048.1 nt Sinopodophyllum hexandrum chloropla... 157253 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
MG593055.1 nt Dysosma pleiantha chloroplast, comp... 156591 bp Dysosma pleiantha QL-PLN-00-007 541 bp View
MG685915.1 nt Saccharum officinarum cultivar Badi... 141183 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MG709382.1 nt Sideroxylon lanuginosum voucher AH0... 583 bp Sideroxylon lanuginosum QL-PLN-00-007 583 bp View
MG709384.1 nt Hopia obtusa voucher AH03 tRNA-Leu ... 617 bp Hopia obtusa QL-PLN-00-007 617 bp View
MG709386.1 nt Sorghastrum nutans voucher AH05 tRN... 527 bp Sorghastrum nutans QL-PLN-00-007 527 bp View
MG709387.1 nt Dichanthelium oligosanthes voucher ... 613 bp Dichanthelium oligosanthes QL-PLN-00-007 613 bp View
MG709388.1 nt Quercus marilandica voucher AH07 tR... 559 bp Quercus marilandica QL-PLN-00-007 559 bp View
MG709394.1 nt Disakisperma dubium voucher KL05 tR... 618 bp Disakisperma dubium QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.