Match details
Record ID: |
MG593046.1 |
Database: |
nt |
Go to original record |
Description: |
Dysosma versipellis chloroplast, complete genome. |
Taxon: |
Dysosma versipellis |
Original size: |
156840 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49116 |
49656 |
+ |
541 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactgag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcgg aaaagggata ggtgcagaga
151 ctcgatggaa gctgttctaa cgaatgaagt tggtcgaaga aaatctttct
201 attaaaactc cagaaaggat gaacctatat atgatatata ggtatacgta
251 ctgaaataaa atagaaaaga ttaatgaaat acgaatcctt tatttaactt
301 atacaaaaat tgaaaaattt ttctgaatcg attccatgtg gaagtaagga
351 tcgaatattc actgatcaaa tcagccactt tagagtatag tatgatatag
401 attttgtgaa gaactaacta attggacgag aataaagata gagtcccatt
451 ctacatgtca ataccgacaa caatgaaatt tatagtaaga ggaaaatccg
501 tcgactttag caatcgtgag ggttcaagtc cctctatccc c
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.43e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
541 |
522 |
2.43e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.