Match details
Record ID: |
MG524996.1 |
Database: |
nt |
Go to original record |
Description: |
Alangium chinense chloroplast, complete genome. |
Taxon: |
Alangium chinense |
Original size: |
156684 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48699 |
49282 |
+ |
584 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aatcaaaaaa ggataggtgc agagactcaa cggaagctgt
201 tctaacaaat ggagttgact acgttgcgtt attagaagaa tcttttcatc
251 gaaacttcag aaaggatgaa ggataaaact atatacatac gtactgaaat
301 attatatcaa atgattaatg acgacccgaa cctgtatctg tattttttta
351 tatgaaaaat ggaagaattg ttgtgaatcg attccaaatt gaagaaagaa
401 tcaaatattc attcatcaaa tcattcactc catagtctga tagatctttt
451 gaagaactga ttaatcgaac gagaataaag atagagtccc attctacatg
501 tcaataccga caacaatgaa atttatagta agaggaaaat ccgtcgattt
551 tataaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
584 |
565 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.