Match details
Record ID: |
MG524998.1 |
Database: |
nt |
Go to original record |
Description: |
Cornus capitata chloroplast, complete genome. |
Taxon: |
Cornus capitata |
Original size: |
157200 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48840 |
49427 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaggttc
151 ggaaagcgaa aataaaaaaa ggggataggt gcagagactc aatggaagct
201 gttctaacac gtggagttga ctaagttgtg ttgttagaag aatctttttt
251 catcgaaact tcagaaagga tgaaggagaa aactatatac atacgtatac
301 gtactgaaat attatatcaa atgattactg acgacacgaa tctttatttt
351 tttatatgaa aaatcaaaga attgttgtga gtcgatttca aattgaagaa
401 agaatccaat attcattgat caaatcattc actccgtagt ctgatatatc
451 ttttgaagaa ctgattaatc gaacgagaat aaagatagag tcccattcta
501 catgtcaata ccgacaacaa tgaaatttat agtaagagga aaatccgtcg
551 attttagaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.